Cleanup.
This commit is contained in:
parent
fddd1c6b84
commit
0241354dc1
@ -24,13 +24,13 @@ my @sortedlines;
|
||||
my @data;
|
||||
my @avg_data;
|
||||
my $intervals;
|
||||
my %seen_days;
|
||||
my %seen_weeks;
|
||||
my %seen_days;
|
||||
my %seen_weeks;
|
||||
my $page_size;
|
||||
my $gnuplot_data;
|
||||
my $total_day_graphs;
|
||||
my $total_week_graphs;
|
||||
my $count_graphs = 0;
|
||||
my $count_graphs = 0;
|
||||
my $page_number = 0;
|
||||
my $interval = 15; # The number of minutes to average points for the area range graph
|
||||
|
||||
@ -40,6 +40,7 @@ my $output = '';
|
||||
my $max_glucose = 8;
|
||||
my $min_glucose = 4;
|
||||
my $graph_max = 21;
|
||||
my $noicons = 0;
|
||||
my $units = '';
|
||||
my $page = 'a4';
|
||||
my $graphs_per_page = 2;
|
||||
@ -50,7 +51,8 @@ GetOptions ("input=s" => \$input, # The name of the CSV file from wh
|
||||
"max:i" => \$graph_max, # The highest displayed glucose level on each graph
|
||||
"units:s" => \$units, # mmol/L or mg/dL
|
||||
"pagesize:s" => \$page, # size of page to print
|
||||
"graphs:i" => \$graphs_per_page) # The number of days printed on each page
|
||||
"noicons" => \$noicons, # include icons (yes or no)
|
||||
"graphs:i" => \$graphs_per_page)# The number of days printed on each page
|
||||
or die $error;
|
||||
|
||||
|
||||
@ -67,14 +69,14 @@ sub calculate_max_min {
|
||||
my $date = Time::Piece->strptime( $key, $fmt );
|
||||
my ( $hour, $minute ) = ( $date->hour, $date->min );
|
||||
my $time = sprintf( "%02d:%02d:00", $hour, int($minute/$interval)*$interval );
|
||||
|
||||
|
||||
# Override the current minimum values for this interval if it
|
||||
# exists; otherwise, set it
|
||||
if ( exists ( $intervals{$time}{min} ) ) {
|
||||
if ( $intervals{$time}{min} < $value ) {
|
||||
$intervals{$time}{min} = $value;
|
||||
}
|
||||
} else {
|
||||
} else {
|
||||
$intervals{$time}{min} = $value;
|
||||
}
|
||||
# Override the current maximum values for this interval if it
|
||||
@ -83,7 +85,7 @@ sub calculate_max_min {
|
||||
if ( $intervals{$time}{max} > $value ) {
|
||||
$intervals{$time}{max} = $value;
|
||||
}
|
||||
} else {
|
||||
} else {
|
||||
$intervals{$time}{max} = $value;
|
||||
}
|
||||
}
|
||||
@ -92,9 +94,9 @@ sub calculate_max_min {
|
||||
|
||||
|
||||
|
||||
open( my $ifh, '<:encoding(UTF-8)', $input )
|
||||
open( my $ifh, '<:encoding(UTF-8)', $input )
|
||||
or die "Could not open file '$input' $!";
|
||||
|
||||
|
||||
while ( my $row = <$ifh> ) {
|
||||
chomp( $row );
|
||||
# Clean up the comments
|
||||
@ -106,6 +108,10 @@ while ( my $row = <$ifh> ) {
|
||||
|
||||
# Parse CSV into whitespace-separated tokens to avoid conflicting separators
|
||||
$row =~ s#^"(\d{4}-\d{2}-\d{2}) (\d{2}:\d{2}:\d{2})","([\d\.]+)",.*,"(.*?)"$#$1T$2 $3 "$4"#;
|
||||
|
||||
# Remove icons if not requested
|
||||
$row =~ s# "[^"]+"## if ( $noicons );
|
||||
|
||||
push @filelines, $row;
|
||||
}
|
||||
|
||||
@ -118,12 +124,12 @@ if ( $page =~ /a4/i ) {
|
||||
$page_size = "11in,8.5in";
|
||||
} elsif ( $page =~ /\d+(cm|in),\d+/ ) {
|
||||
$page_size = $page;
|
||||
} else {
|
||||
} else {
|
||||
# A4 size default
|
||||
$page_size = "29.7cm,21.0cm";
|
||||
}
|
||||
|
||||
# Standardise units for gnuplot's A1C calculations
|
||||
# Standardise units for gnuplot's A1C calculations
|
||||
if ( $units =~ /mg/i ) {
|
||||
$units = 'mg/dL';
|
||||
} elsif ( $units =~ /mmol/i ) {
|
||||
@ -134,18 +140,18 @@ if ( $units =~ /mg/i ) {
|
||||
|
||||
# Get the list of days for which to produce graphs
|
||||
foreach my $row ( @filelines ) {
|
||||
if ( $row =~ m#^((\d{4})-(\d{2})-(\d{2}))#ms ) {
|
||||
my ( $date,$year,$month,$day ) = ( $1, $2, $3, $4 );
|
||||
if ( $row =~ m#^((\d{4})-(\d{2})-(\d{2}))#ms ) {
|
||||
my ( $date,$year,$month,$day ) = ( $1, $2, $3, $4 );
|
||||
my $time = Time::Piece->strptime( $date, "%Y-%m-%d" );
|
||||
my $week = $time->strftime("%W");
|
||||
$seen_weeks{$year}{$week}++;
|
||||
$seen_days{$date}++;
|
||||
$seen_days{$date}++;
|
||||
}
|
||||
}
|
||||
# Remove weeks for which there is less than a day of results in that week
|
||||
# (In a full day, assuming a reading is taken every 15 minutes, there will be 96 readings)
|
||||
foreach my $year ( sort keys %seen_weeks ) {
|
||||
foreach my $week ( sort keys %{$seen_weeks{$year}} ) {
|
||||
foreach my $year ( sort keys %seen_weeks ) {
|
||||
foreach my $week ( sort keys %{$seen_weeks{$year}} ) {
|
||||
delete $seen_weeks{$year}{$week} if ( scalar $seen_weeks{$year}{$week} < 96 );
|
||||
}
|
||||
}
|
||||
@ -156,12 +162,12 @@ $intervals = calculate_max_min( 'lines' => \@filelines, 'format' => '%Y-%m-%dT%H
|
||||
|
||||
# Set up basic gnuplot output options
|
||||
push @data, qq(
|
||||
set terminal pdf size $page_size enhanced font 'Calibri,14' linewidth 1
|
||||
set terminal pdf size $page_size enhanced font 'Calibri,14' linewidth 1
|
||||
#set output '$output'
|
||||
);
|
||||
|
||||
# Read each line into a $Data variable for use by gnuplot
|
||||
foreach my $d ( sort keys %seen_days ) {
|
||||
foreach my $d ( sort keys %seen_days ) {
|
||||
my $label = "$1$2$3" if ( $d =~ m#(\d{4})-(\d{2})-(\d{2})# );
|
||||
push @data, qq(\$Data$label << EOD);
|
||||
@sortedlines = ();
|
||||
@ -199,8 +205,8 @@ push @data, qq(EOD);
|
||||
|
||||
|
||||
# Output weekly data averages by hour of the day
|
||||
foreach my $year ( sort keys %seen_weeks ) {
|
||||
foreach my $week ( sort keys %{$seen_weeks{$year}} ) {
|
||||
foreach my $year ( sort keys %seen_weeks ) {
|
||||
foreach my $week ( sort keys %{$seen_weeks{$year}} ) {
|
||||
my $time = Time::Piece->strptime( $year, "%Y" );
|
||||
my $mon = $time + ( ONE_WEEK * ( $week - 1 ) ) + ( ONE_DAY );
|
||||
my $sun = $time + ( ONE_WEEK * ( $week - 1 ) ) + ( ONE_DAY * 7 );
|
||||
@ -253,10 +259,10 @@ set datafile separator whitespace
|
||||
set timefmt "%H:%M:%S"
|
||||
# Store in table in seconds, as the value must be a number
|
||||
set format x "%s" timedate
|
||||
set format y "%.2f" numeric
|
||||
set format y "%.2f" numeric
|
||||
|
||||
);
|
||||
foreach my $d ( sort keys %seen_days ) {
|
||||
foreach my $d ( sort keys %seen_days ) {
|
||||
my $label = "$1$2$3" if ( $d =~ m#(\d{4})-(\d{2})-(\d{2})# );
|
||||
push @data, qq(
|
||||
set samples 10000
|
||||
@ -281,7 +287,7 @@ set datafile separator whitespace
|
||||
set timefmt "%H:%M:%S"
|
||||
# Store in table in seconds, as the value must be a number
|
||||
set format x "%s" timedate
|
||||
set format y "%.2f" numeric
|
||||
set format y "%.2f" numeric
|
||||
|
||||
set samples 10000
|
||||
|
||||
@ -320,8 +326,8 @@ unset table
|
||||
|
||||
|
||||
# Sample the average $interval values by week into a smoothed plot, and store each in a new table
|
||||
foreach my $year ( sort keys %seen_weeks ) {
|
||||
foreach my $week ( sort keys %{$seen_weeks{$year}} ) {
|
||||
foreach my $year ( sort keys %seen_weeks ) {
|
||||
foreach my $week ( sort keys %{$seen_weeks{$year}} ) {
|
||||
my $time = Time::Piece->strptime( "$year", "%Y" );
|
||||
my $mon = $time + ( ONE_WEEK * ( $week - 1 ) ) + ( ONE_DAY );
|
||||
my $label = $mon->strftime("%Y%m%d");
|
||||
@ -330,7 +336,7 @@ set datafile separator whitespace
|
||||
|
||||
set timefmt "%H:%M:%S"
|
||||
set format x "%s" timedate
|
||||
set format y "%.2f" numeric
|
||||
set format y "%.2f" numeric
|
||||
set samples 10000
|
||||
set xdata
|
||||
stats \$DataWeekAvg$label using 2
|
||||
@ -383,7 +389,7 @@ set style data lines
|
||||
set xdata time
|
||||
set timefmt "%H:%M:%S"
|
||||
set format x "%H:%M" timedate
|
||||
set format y "%.0f" numeric
|
||||
set format y "%.0f" numeric
|
||||
# If extended to 23:59, the x grid overlaps with the border
|
||||
set xrange ["00:00":"23:58"]
|
||||
set yrange [0:$graph_max]
|
||||
@ -397,12 +403,12 @@ set rmargin 10
|
||||
set tmargin 5
|
||||
set bmargin 5
|
||||
|
||||
set multiplot title layout $graphs_per_page,1
|
||||
set multiplot title layout $graphs_per_page,1
|
||||
|
||||
);
|
||||
|
||||
# For each day, generate a graph with some fancy options
|
||||
foreach my $d ( sort keys %seen_days ) {
|
||||
foreach my $d ( sort keys %seen_days ) {
|
||||
my $label = "$1$2$3" if ( $d =~ m#(\d{4})-(\d{2})-(\d{2})# );
|
||||
my $time = Time::Piece->strptime( $d, "%Y-%m-%d" );
|
||||
#my $title = $time->strftime("%a %d %b %Y");
|
||||
@ -413,7 +419,7 @@ foreach my $d ( sort keys %seen_days ) {
|
||||
push @data, qq(
|
||||
set title "Daily Glucose Summary for $title" font "Calibri,18"
|
||||
set xlabel "Time" offset 0,-0.25
|
||||
set ylabel "Blood glucose"
|
||||
set ylabel "Blood glucose"
|
||||
set xtics left tc rgb "#000000"
|
||||
set ytics 2 tc rgb "#000000"
|
||||
set grid ytics ls 100 front
|
||||
@ -421,7 +427,7 @@ set grid ytics ls 100 front
|
||||
set object 1 rect from graph 0, first $min_glucose to graph 1,first $max_glucose fc ls 6 fs solid 0.2 back
|
||||
|
||||
AVG = Mean$label
|
||||
AVG_LABEL = gprintf("Median glucose: %.2f", AVG)
|
||||
AVG_LABEL = gprintf("Median glucose: %.2f", AVG)
|
||||
set object 2 rect at graph 0.9, graph 0.9 fc ls 2 fs transparent solid 0.5 front size char strlen(AVG_LABEL), char 3
|
||||
set label 2 AVG_LABEL at graph 0.9, graph 0.9 front center
|
||||
|
||||
@ -431,8 +437,8 @@ plot \$SmoothData$label using (strftime("%H:%M:%S", \$1)):2:( \$2 > $max_glucose
|
||||
set multiplot previous
|
||||
set title " "
|
||||
set xlabel " " offset 0,-0.25
|
||||
set ylabel " "
|
||||
set xtics tc rgb "#ffffff00"
|
||||
set ylabel " "
|
||||
set xtics tc rgb "#ffffff00"
|
||||
set ytics tc rgb "#ffffff00"
|
||||
unset grid
|
||||
unset object 1
|
||||
@ -461,7 +467,7 @@ set style data lines
|
||||
set xdata time
|
||||
set timefmt "%H:%M:%S"
|
||||
set format x "%H:%M" timedate
|
||||
set format y "%.0f" numeric
|
||||
set format y "%.0f" numeric
|
||||
# If extended to 23:59, the x grid overlaps with the border
|
||||
set xrange ["00:00":"23:58"]
|
||||
set yrange [0:$graph_max]
|
||||
@ -477,11 +483,11 @@ set rmargin 10
|
||||
set tmargin 5
|
||||
set bmargin 5
|
||||
|
||||
set multiplot title layout $graphs_per_page,1
|
||||
set multiplot title layout $graphs_per_page,1
|
||||
|
||||
set title "Overall Average Daily Glucose" font "Calibri,18"
|
||||
set xlabel "Time" offset 0,-0.25
|
||||
set ylabel "Blood glucose"
|
||||
set ylabel "Blood glucose"
|
||||
set xtics left tc rgb "#000000"
|
||||
set ytics 2 tc rgb "#000000"
|
||||
set grid ytics ls 100 front
|
||||
@ -489,7 +495,7 @@ set grid ytics ls 100 front
|
||||
set object 1 rect from graph 0, first $min_glucose to graph 1,first $max_glucose fc ls 6 fs solid 0.05 back
|
||||
|
||||
AVG = MedianTotal
|
||||
AVG_LABEL = gprintf("Median glucose: %.2f", AVG)
|
||||
AVG_LABEL = gprintf("Median glucose: %.2f", AVG)
|
||||
set object 2 rect at graph 0.9, graph 0.9 fc ls 2 fs transparent solid 0.5 front size char strlen(AVG_LABEL), char 3
|
||||
set label 2 AVG_LABEL at graph 0.9, graph 0.9 front center
|
||||
|
||||
@ -501,26 +507,26 @@ if (A1C == 0 && '$units' eq 'mmol/L') {
|
||||
A1C = (MedianTotal + 2.59) / 1.59
|
||||
}
|
||||
# mg/dL numbers tend to be higher than 35
|
||||
if (A1C == 0 && MedianTotal >= 35) {
|
||||
if (A1C == 0 && MedianTotal >= 35) {
|
||||
A1C = (MedianTotal + 46.7) / 28.7
|
||||
}
|
||||
# mmol/L numbers tend to be lower than 35
|
||||
if (A1C == 0 && MedianTotal < 35) {
|
||||
if (A1C == 0 && MedianTotal < 35) {
|
||||
A1C = (MedianTotal + 2.59) / 1.59
|
||||
}
|
||||
|
||||
A1C_LABEL = gprintf("Average A1c: %.1f", A1C)
|
||||
A1C_LABEL = gprintf("Average A1c: %.1f", A1C)
|
||||
set object 3 rect at graph 0.07, graph 0.9 fc ls 4 fs transparent solid 0.5 front size char strlen(A1C_LABEL), char 3
|
||||
set label 3 A1C_LABEL at graph 0.07, graph 0.9 front center
|
||||
|
||||
plot \$DataMaxMinTable using (strftime("%H:%M:%S", \$1)):2:3 with filledcurves lc 111, \$SmoothDataAvg using (strftime("%H:%M:%S", \$1)):2:( \$2 > $max_glucose || \$2 < $min_glucose ? 110 : 1 ) with lines lw 3 lc variable
|
||||
plot \$DataMaxMinTable using (strftime("%H:%M:%S", \$1)):2:3 with filledcurves lc 111, \$SmoothDataAvg using (strftime("%H:%M:%S", \$1)):2:( \$2 > $max_glucose || \$2 < $min_glucose ? 110 : 1 ) with lines lw 3 lc variable
|
||||
|
||||
# Add an x grid
|
||||
set multiplot previous
|
||||
set title " "
|
||||
set xlabel " " offset 0,-0.25
|
||||
set ylabel " "
|
||||
set xtics tc rgb "#ffffff00"
|
||||
set ylabel " "
|
||||
set xtics tc rgb "#ffffff00"
|
||||
set ytics tc rgb "#ffffff00"
|
||||
unset grid
|
||||
unset object 1
|
||||
@ -540,7 +546,7 @@ set style data lines
|
||||
set xdata time
|
||||
set timefmt "%H:%M:%S"
|
||||
set format x "%H:%M" timedate
|
||||
set format y "%.0f" numeric
|
||||
set format y "%.0f" numeric
|
||||
# If extended to 23:59, the x grid overlaps with the border
|
||||
set xrange ["00:00":"23:58"]
|
||||
set yrange [0:$graph_max]
|
||||
@ -556,10 +562,10 @@ set rmargin 10
|
||||
set tmargin 5
|
||||
set bmargin 5
|
||||
|
||||
set multiplot title layout $graphs_per_page,1
|
||||
set multiplot title layout $graphs_per_page,1
|
||||
);
|
||||
foreach my $year ( sort keys %seen_weeks ) {
|
||||
foreach my $week ( sort keys %{$seen_weeks{$year}} ) {
|
||||
foreach my $year ( sort keys %seen_weeks ) {
|
||||
foreach my $week ( sort keys %{$seen_weeks{$year}} ) {
|
||||
my $time = Time::Piece->strptime( "$year", "%Y" );
|
||||
my $mon = $time + ( ONE_WEEK * ( $week - 1 ) ) + ( ONE_DAY );
|
||||
my $sun = $time + ( ONE_WEEK * ( $week - 1 ) ) + ( ONE_DAY * 7 );
|
||||
@ -568,7 +574,7 @@ foreach my $year ( sort keys %seen_weeks ) {
|
||||
push @data, qq(
|
||||
set title "Average Daily Glucose from $title" font "Calibri,18"
|
||||
set xlabel "Time" offset 0,-0.25
|
||||
set ylabel "Blood glucose"
|
||||
set ylabel "Blood glucose"
|
||||
set xtics left tc rgb "#000000"
|
||||
set ytics 2 tc rgb "#000000"
|
||||
set grid ytics ls 100 front
|
||||
@ -576,7 +582,7 @@ set grid ytics ls 100 front
|
||||
set object 1 rect from graph 0, first $min_glucose to graph 1,first $max_glucose fc ls 6 fs solid 0.05 back
|
||||
|
||||
AVG = MedianTotal$label
|
||||
AVG_LABEL = gprintf("Median glucose: %.2f", AVG)
|
||||
AVG_LABEL = gprintf("Median glucose: %.2f", AVG)
|
||||
set object 2 rect at graph 0.9, graph 0.9 fc ls 2 fs transparent solid 0.5 front size char strlen(AVG_LABEL), char 3
|
||||
set label 2 AVG_LABEL at graph 0.9, graph 0.9 front center
|
||||
|
||||
@ -588,26 +594,26 @@ if (A1C == 0 && '$units' eq 'mmol/L') {
|
||||
A1C = (MedianTotal$label + 2.59) / 1.59
|
||||
}
|
||||
# mg/dL numbers tend to be higher than 35
|
||||
if (A1C == 0 && MedianTotal$label >= 35) {
|
||||
if (A1C == 0 && MedianTotal$label >= 35) {
|
||||
A1C = (MedianTotal$label + 46.7) / 28.7
|
||||
}
|
||||
# mmol/L numbers tend to be lower than 35
|
||||
if (A1C == 0 && MedianTotal$label < 35) {
|
||||
if (A1C == 0 && MedianTotal$label < 35) {
|
||||
A1C = (MedianTotal$label + 2.59) / 1.59
|
||||
}
|
||||
|
||||
A1C_LABEL = gprintf("Average A1c: %.1f", A1C)
|
||||
A1C_LABEL = gprintf("Average A1c: %.1f", A1C)
|
||||
set object 3 rect at graph 0.07, graph 0.9 fc ls 4 fs transparent solid 0.5 front size char strlen(A1C_LABEL), char 3
|
||||
set label 3 A1C_LABEL at graph 0.07, graph 0.9 front center
|
||||
|
||||
plot \$DataWeekMaxMinTable$label using (strftime("%H:%M:%S", \$1)):2:3 with filledcurves lc 111, \$SmoothDataWeekAvg$label using (strftime("%H:%M:%S", \$1)):2:( \$2 > $max_glucose || \$2 < $min_glucose ? 110 : 1 ) with lines lw 3 lc variable
|
||||
plot \$DataWeekMaxMinTable$label using (strftime("%H:%M:%S", \$1)):2:3 with filledcurves lc 111, \$SmoothDataWeekAvg$label using (strftime("%H:%M:%S", \$1)):2:( \$2 > $max_glucose || \$2 < $min_glucose ? 110 : 1 ) with lines lw 3 lc variable
|
||||
|
||||
# Add an x grid
|
||||
set multiplot previous
|
||||
set title " "
|
||||
set xlabel " " offset 0,-0.25
|
||||
set ylabel " "
|
||||
set xtics tc rgb "#ffffff00"
|
||||
set ylabel " "
|
||||
set xtics tc rgb "#ffffff00"
|
||||
set ytics tc rgb "#ffffff00"
|
||||
unset grid
|
||||
unset object 1
|
||||
@ -629,7 +635,7 @@ test
|
||||
);
|
||||
|
||||
# Cleanup stored variables
|
||||
foreach my $d ( sort keys %seen_days ) {
|
||||
foreach my $d ( sort keys %seen_days ) {
|
||||
my $label = "$1$2$3" if ( $d =~ m#(\d{4})-(\d{2})-(\d{2})# );
|
||||
push @data, qq(undefine \$Data$label);
|
||||
push @data, qq(undefine \$SmoothData$label);
|
||||
@ -648,11 +654,11 @@ undefine \$DataMaxMinTable
|
||||
$gnuplot_data = join "\n", @data;
|
||||
print $gnuplot_data;
|
||||
|
||||
open( my $ofh, '>', $output )
|
||||
open( my $ofh, '>', $output )
|
||||
or die "Could not open file '$output' $!";
|
||||
|
||||
my ( $pid, $stdin, $stdout, $stderr );
|
||||
use Symbol 'gensym';
|
||||
use Symbol 'gensym';
|
||||
$stderr = gensym;
|
||||
|
||||
$pid = open3( $stdin, $stdout, $stderr, 'gnuplot' );
|
||||
@ -679,7 +685,6 @@ close( $ofh )
|
||||
|
||||
#open(GNUPLOT, "|gnuplot");
|
||||
#print GNUPLOT $gnuplot_data;
|
||||
#close(GNUPLOT);
|
||||
#close(GNUPLOT);
|
||||
|
||||
|
||||
# vim : set expandtab shiftwidth=4 softtabstop=4 tw=1000 :
|
||||
# vim: set expandtab shiftwidth=4 softtabstop=4 tw=1000 :
|
||||
|
Loading…
Reference in New Issue
Block a user